Removal And Installation: Flywheel: Installation

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Install the flywheel and the bolts. Use Special Service Tool: 303-103 (T74P-6375-A) Holding Tool, Flywheel.
Torque: Stage 1: 89 lb.in (10 Nm) | Stage 2: 177 lb.in (20 Nm) | Stage 3: 59 lb.ft (80 Nm)

Fig 1: Flywheel Tightening Sequence
Courtesy of FORD MOTOR COMPANY
Install the transmission. Refer to: Transmission .
Use the Powertrain Control Module (PCM) Misfire Monitor Profile Correction routine in the diagnostic scan tool.