The Solution
WARNING: This page is about a different car, the 2008 GMC Sierra, 2008 GMC Cab & Chassis Sierra, 2008 Chevrolet Silverado, and 2008 Chevrolet Cab & Chassis Silverado. However, it is still accessible from the selected car via links, so may be relevant.
When working on a vehicle with significant temperature differences between the vehicle EVAP system and the nitrogen gas, allow the vehicle EVAP system temperature to stabilize as close as possible to the temperature of the nitrogen gas before conducting the Flowmeter Test.